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Reformated original and final PPI networks

We reformated the PPI networks to make them be suitable for future process.  The table shows the original PPI and the final repurified networks. The last column lists the files for visulization with Cytoscape. We show the original PPI network and the repurified PPI network for Saccharomyces cerevisia in the following pictures.

Genome Original PPI network Final PPI network Protein ID Visualization files for Cytoscape with protein names

Saccharomyces cerevisia

PPI_before.txt PPI_after.txt

name-id.txt

yeast.sif

Drosophila melanogaster

PPI_before.txt PPI_after.txt

name-id.txt

fly.sif

Caenorhabditis elegans

PPI_before.txt PPI_after.txt

name-id.txt

worm.sif

 

Figure: Original Saccharomyces cerevisia PPI network

Figure: FinalSaccharomyces cerevisia PPI network

 


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chenjin@comp.nus.edu.sg